中國科學院深海科學與工程研究所“海洋微生物分子生態學研究組”受“知識創新工程前沿領域”等項目資助，于2013年3月成立，主要開展深海深淵微生物的分子生態學研究。
研究方向
深海深淵微生物生理生態
微生物是海洋生態系統的重要組成部分。在深海深淵等生境中開展相關研究有助于探討微生物在極端環境下的組成、分布及生命活動規律，為生物進化研究提供理論基礎。
深海深淵生物地球化學
深海深淵存在著活躍的生物地球化學過程，其中許多關鍵過程均由微生物介導。此交叉學科研究有助于理解深海及深部生物圈中微生物參與的元素循環過程和機制。
學科帶頭人
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荊紅梅，研究員，博士生導師（博士，香港大學，2006）
海洋微生物分子生態學研究組學科帶頭人
聯系電話：0898-88381165；
電子郵箱：hmjing@idsse.ac.cn
個人信息：http://ir.idsse.ac.cn/hmjing@idsse.ac.cn?
博士后、項目助理招聘中：
http://www.idsse.cas.cn/rcdw2015/rczp2015/201701/t20170117_4737674.html
???團隊成員
劉?皓，博士，副研究員，碩士生導師
電子郵箱：liuh@idsse.ac.cn
張 玥，博士，特別研究助理
電子郵箱：zhangyue@idsse.ac.cn
在讀研究生
王鐠蒂，2023級博士研究生
肖?瑤，2023級博士研究生
吳盛楠，2024級碩士研究生
劉莉莉，2024級碩士研究生
???已畢業研究生
張?玥，博士，2016級博士研究生
姜秋云，博士，2019級博士研究生
王芳洲，博士，2020級博士研究生
張?薇，碩士，2022級碩士研究生
周?鵬，碩士，2013級碩士研究生
許秋彤，碩士，2014級碩士研究生
朱文達，碩士，2015級碩士研究生
黃?寧，碩士，2017級碩士研究生
韋?譽，碩士，2017級碩士研究生
近五年發表文章
1.?Jiang Q, Liu H, Jing Hongmei*, Zhang Y. Syntrophic interactions driving anaerobic methane oxidation in deep-sea cold seeps revealed by DNA-SIP. iScience, 2026, 29(7):116441.
2.?Xiao Y, Liu H, Wang P, Zhang Y, Wang F, Jing Hongmei*. Microbial population structure along the water columns and sediments in the Diamantina and Kermadec trenches. BMC Biology, 2025, 24(1):16.
3.?Chen G#, Jing Hongmei#, Liu B, Zhang J, Ou Y, Liu W, Tian X, Wang R, Yan J, Mao T, Yang S, Zheng Y, Hou L, Dong H. Unique phylogenies and metabolic adaptations of novel lineage III and comammox Nitrospira species from deep-sea sediments. ISME Communications, 2026, 6(1):ycag003.
4.?Zhang Yue, Wang Puding, Jing Hongmei*. Geographical distribution and driving force of microbial communities in different trenches. Ecological Indicators, 2026,183,114667.?
5.?Li Yingdong, Xiao Yao, Liu Hao, Wang Puding,?Zhao?Weishu,?Peng?Xiaotong,?Xiao?Xiang*,?Jing Hongmei*.?Hadal trench sediments as key ecological reservoir for prokaryotic evolution. The Innovation Life,?2026, 4,100209.
6.?Xiao Yao, Zhao Rui*, Zhao Weishu, Wang Puding, Xiao?Xiang*, Peng?Xiaotong*, Jing Hongmei*. Genomics-based insights into the expanded diversity and adaptation strategies of hadal trench anammox bacteria. ISME Communications, 2026,?6(1),?ycag011.
7.?Wang Puding, Peng Xiaotong, Jing Hongmei*. Diversity and ecological potentials of viruses inhabiting in the Kermadec and Diamantina trench sediments. ISME Communications, 2025, 5(1), ycaf147.
8.?Zhang Yue, Liu Hongbin, Jing Hongmei*. Community differences and potential function along the particle size spectrum of microbes in the twilight zone. Microbiome, 2025, 13(1), 121.
9.?Zhang Wei, Li Yingdong, Chu Yunmeng, Liu Hao, Jing Hongmei*, Xia Qianfeng. Deep-sea ecosystems as an unexpected source of antibiotic resistance genes. Marine Drugs, 2025, 23(1), 17.
10.?Li Yingdong, Liu Hao, Xiao Yao,?Jing Hongmei*. Metagenome sequencing and 982 microbial genomes from Kermadec and Diamantina Trenches sediments. Scientific Data, 2024, 11, 1067.
11.?Zhang Yue, Jing Hongmei*. Metagenome sequencing and 107 microbial genomes from seamount sediments along the Yap and Mariana trenches.?Scientific Data,?2024, 11, 887.
12. Hu Aoran, Zhao Weishu, Wang Jing, Qi Qi, Xiao, Xiang, Jing Hongmei*. Microbial communities reveal niche partitioning across the slope and bottom zones of the challenger deep. Environmental Microbiology Reports, 2024,16(4), e13314.
13. Li Yingdong, Wang Ting, Jing Hongmei*, Xiao Yao. Evolutionary ecology of denitrifying methanotrophic NC10 bacteria in the deep‐sea biosphere. Molecular Ecology, 2024, e17372.
14. Liu Hao, Jing Hongmei*. The vertical metabolic activity and community structure of prokaryotes along different water depths in the Kermadec and Diamantina trenches. Microorganisms, 2024, 12(4), 708.
15. Zhang Yue, Jing Hongmei*. Deterministic process controlling the prokaryotic community assembly across seamounts along in the Yap and Mariana trenches. Ecological Indicators, 2024, 111538.
16. Chen Hao*, Li Chaolun, Qiu Jian-Wen, Bettencourt Raul, Feng Dong, Wang Yong, Jing Hongmei*, et al. Editorial: Deep-sea chemosynthetic ecosystems: Living in extreme environments. Frontiers in Marine Science, 2023, 10, 1087465.
17. Zhang Yue, Xia Xiaomin, Wan Linglin, Han Bo-Ping, Liu Hongbin, Jing Hongmei*. Microbial communities are shaped by different ecological processes in subtropical reservoirs of different trophic states. Microbial Ecology, 2023, 86(3), 2073-2085.
18. Zhang Yue, Liu Hongbin, Huang Ning, Peng Xiaotong*, Jing Hongmei*. Geographical distribution and driving force of micro-eukaryotes in the seamount sediments along the island arc of the Yap and Mariana trenches. Microbiology Spectrum, 2023, 11(6):e0206923.
19. Jiang Qiuyun, Jing Hongmei*, Li Xuegong, et al. Active pathways of anaerobic methane oxidization in deep-sea cold seeps of the South China Sea. Microbiology Spectrum, 2023, 11(6):e0250523.
20. Jing Hongmei*, Xiao Xiang, Zhang Yue, et al. Composition and ecological roles of the core microbiome along the abyssal-hadal transition zone sediments of the Mariana Trench. Microbiology Spectrum, 2022, 10(3):e0198821.
21. Zhang Yue, Huang Ning, Jing Hongmei*. Biogeography and population divergence of microeukaryotes associated with fluids and chimneys in the hydrothermal vents of the Southwest Indian Ocean. Microbiology Spectrum, 2022, 10(5):e0263221.
22. Jamy Mahwash, Biwer Charlie, Vaulot Daniel, Obiol Aleix, Jing Hongmei, et al. Global patterns and rates of habitat transitions across the eukaryotic tree of life. Nature Ecology & Evolution, 2022, 6(10):1458-1470.
23. Jiang Qiuyun, Jing Hongmei*, Jiang Qiulong, et al. Insights into carbon-fixation pathways through metagonomics in the sediments of deep-sea cold seeps. Marine Pollution Bulletin, 2022, 176:113458.
24. Liu Hao, Zhou Peng, Cheung Shunyan, Lu Yanhong, Liu Hongbin, Jing Hongmei*. Distribution and oxidation rates of ammonia-oxidizing archaea influenced by the coastal upwelling off Eastern Hainan Island. Microorganisms, 2022, 10(5):952.
25. Du Mengran, Peng Xiaotong*, Zhang Haibin,Ye Cong, Dasgupta Shamik, Li Jiwei, Li Jiangtao, Liu Shuangquan, Xu Hengchao, Chen Chuanxu, Jing Hongmei, et al. Geology, environment and life of the deepest part of the world's ocean, Innovation, 2021, 2(2):100109.
26. Jian Huahua, Yi Yi, Wang Jiahua, Hao Yali, Zhang Mujie, Wang Siyuan, Meng Canxing, Zhang Yue, Jing Hongmei, et al. Diversity and distribution of viruses inhabiting the deepest ocean on Earth. The ISME Journal, 2021, 15(10): 3049-3110.
27. Xia Xiaomin, Zheng Qiang, Leung Sze Ki, Wang Yu, Lee Pui Yin, Jing Hongmei, et al. Distinct metabolic strategies of the dominant heterotrophic bacterial groups associated with marine Synechococcusa. Science of the Total Environment, 2021, 798: 149208.
28. Zhao Jiulong, Jing Hongmei*, Wang Zengmeng, et al. Novel viral communities potentially assisting in carbon, nitrogen, and sulfur metabolism in the upper slope sediments of Mariana Trench. mSystems, 2021, 7(1):e0135821.
碩士、博士研究生招生信息
碩士招生簡章：http://www.idsse.cas.cn/xwdt2015/tzgg2015/201609/t20160921_4666092.html
博士招生簡章：http://www.idsse.cas.cn/xwdt2015/tzgg2015/201609/t20160921_4666093.html
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